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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDAC10Histone deacetylase 10. (683 aa)    
Predicted Functional Partners:
ARID4B
AT-rich interaction domain 4B.
    
 0.862
ARID4A
AT-rich interaction domain 4A.
    
 0.862
HDAC11
Histone deacetylase 11.
  
 
 
0.842
TUBGCP6
Tubulin gamma complex associated protein 6.
 
 
   0.753
SIN3B
SIN3 transcription regulator family member B.
   
 0.652
SIN3A
SIN3 transcription regulator family member A.
   
 0.652
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.622
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
    
  0.605
NUP155
Nucleoporin 155.
   
 0.591
ENSAPLP00000023897
Uncharacterized protein.
   
 0.587
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.