Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PGAM5PGAM family member 5, mitochondrial serine/threonine protein phosphatase. (140 aa)    
Predicted Functional Partners:
FUNDC1
FUN14 domain containing 1.
    
 0.995
DNM1L
Dynamin 1 like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.948
BCL2L1
BCL2 like 1.
    
 0.929
RBX1
Ring-box 1.
    
 
 0.886
KLHL17
Kelch like family member 17.
    
 
 0.873
FUNDC2
FUN14 domain containing 2.
    
 0.863
PINK1
PTEN induced kinase 1.
    
 
 0.850
PHB2
Prohibitin.
   
 
 0.808
ZRANB1
Zinc finger RANBP2-type containing 1.
    
 
 0.754
BACH1
BTB domain and CNC homolog 1.
    
 
 0.701
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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