STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRTGProtogenin. (1165 aa)    
Predicted Functional Partners:
LRFN2
Leucine rich repeat and fibronectin type III domain containing 2.
    
 0.637
ERICH6B
FAM194 domain-containing protein.
    
 0.632
AMOTL1
Angiomotin like 1.
    
 0.616
NEDD4
E3 ubiquitin-protein ligase.
 
    
 0.599
AP3B1
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
      
 0.594
ANXA2
Annexin.
      
 0.594
CHMP4B
Charged multivesicular body protein 4B.
      
 0.594
AQP9
Aquaporin 9; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 0.536
UNC13C
Unc-13 homolog C.
      
 0.499
CGNL1
Cingulin like 1.
      
 0.497
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.