BMS1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BMS1

BMS1 ribosome biogenesis factor. (1305 aa)

Predicted Functional Partners:

RCL1

0.999

WDR3

0.996

NOP14

0.995

WDR36

0.995

NAT10

0.994

HEATR1

0.993

NOL10

0.993

UTP20

0.993

WDR75

0.992

NOL6

0.992

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	HEATR1	ENSAPLP00000003306	ENSAPLP00000007788	BMS1 ribosome biogenesis factor.	HEAT repeat containing 1.	0.993
BMS1	NAT10	ENSAPLP00000003306	ENSAPLP00000007357	BMS1 ribosome biogenesis factor.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.994
BMS1	NOL10	ENSAPLP00000003306	ENSAPLP00000009679	BMS1 ribosome biogenesis factor.	Nucleolar protein 10.	0.993
BMS1	NOL6	ENSAPLP00000003306	ENSAPLP00000028359	BMS1 ribosome biogenesis factor.	Nucleolar protein 6.	0.992
BMS1	NOP14	ENSAPLP00000003306	ENSAPLP00000006376	BMS1 ribosome biogenesis factor.	NOP14 nucleolar protein.	0.995
BMS1	RCL1	ENSAPLP00000003306	ENSAPLP00000030939	BMS1 ribosome biogenesis factor.	RNA terminal phosphate cyclase like 1.	0.999
BMS1	UTP20	ENSAPLP00000003306	ENSAPLP00000015591	BMS1 ribosome biogenesis factor.	UTP20 small subunit processome component.	0.993
BMS1	WDR3	ENSAPLP00000003306	ENSAPLP00000005224	BMS1 ribosome biogenesis factor.	WD repeat domain 3.	0.996
BMS1	WDR36	ENSAPLP00000003306	ENSAPLP00000028874	BMS1 ribosome biogenesis factor.	WD repeat domain 36.	0.995
BMS1	WDR75	ENSAPLP00000003306	ENSAPLP00000010813	BMS1 ribosome biogenesis factor.	WD repeat domain 75.	0.992
HEATR1	BMS1	ENSAPLP00000007788	ENSAPLP00000003306	HEAT repeat containing 1.	BMS1 ribosome biogenesis factor.	0.993
HEATR1	NAT10	ENSAPLP00000007788	ENSAPLP00000007357	HEAT repeat containing 1.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.992
HEATR1	NOL10	ENSAPLP00000007788	ENSAPLP00000009679	HEAT repeat containing 1.	Nucleolar protein 10.	0.972
HEATR1	NOL6	ENSAPLP00000007788	ENSAPLP00000028359	HEAT repeat containing 1.	Nucleolar protein 6.	0.997
HEATR1	NOP14	ENSAPLP00000007788	ENSAPLP00000006376	HEAT repeat containing 1.	NOP14 nucleolar protein.	0.995
HEATR1	RCL1	ENSAPLP00000007788	ENSAPLP00000030939	HEAT repeat containing 1.	RNA terminal phosphate cyclase like 1.	0.948
HEATR1	UTP20	ENSAPLP00000007788	ENSAPLP00000015591	HEAT repeat containing 1.	UTP20 small subunit processome component.	0.998
HEATR1	WDR3	ENSAPLP00000007788	ENSAPLP00000005224	HEAT repeat containing 1.	WD repeat domain 3.	0.996
HEATR1	WDR36	ENSAPLP00000007788	ENSAPLP00000028874	HEAT repeat containing 1.	WD repeat domain 36.	0.997
HEATR1	WDR75	ENSAPLP00000007788	ENSAPLP00000010813	HEAT repeat containing 1.	WD repeat domain 75.	0.998