U3I7X3_ANAPP protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U3I7X3_ANAPP

Rho-GAP domain-containing protein. (238 aa)

Predicted Functional Partners:

ARHGAP20

0.900

RIOK1

0.594

RHOA

0.479

RHOC

0.479

RHOB

0.479

ARHGAP40

0.469

RHPN1

0.459

RND1

0.448

RND3

0.448

GTF2E2

0.438

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP20	ARHGAP40	ENSAPLP00000003338	ENSAPLP00000029187	Uncharacterized protein.	Rho GTPase activating protein 40.	0.469
ARHGAP20	GTF2E2	ENSAPLP00000003338	ENSAPLP00000001961	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.438
ARHGAP20	RHOA	ENSAPLP00000003338	ENSAPLP00000014536	Uncharacterized protein.	Ras homolog family member A.	0.479
ARHGAP20	RHOB	ENSAPLP00000003338	ENSAPLP00000019696	Uncharacterized protein.	Ras homolog family member B.	0.479
ARHGAP20	RHOC	ENSAPLP00000003338	ENSAPLP00000019250	Uncharacterized protein.	Uncharacterized protein.	0.479
ARHGAP20	RHPN1	ENSAPLP00000003338	ENSAPLP00000010875	Uncharacterized protein.	Rhophilin Rho GTPase binding protein 1.	0.459
ARHGAP20	RIOK1	ENSAPLP00000003338	ENSAPLP00000003750	Uncharacterized protein.	RIO kinase 1.	0.594
ARHGAP20	RND1	ENSAPLP00000003338	ENSAPLP00000002622	Uncharacterized protein.	Rho family GTPase 1.	0.448
ARHGAP20	RND3	ENSAPLP00000003338	ENSAPLP00000006383	Uncharacterized protein.	Rho family GTPase 3.	0.448
ARHGAP20	U3I7X3_ANAPP	ENSAPLP00000003338	ENSAPLP00000003344	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.900
ARHGAP40	ARHGAP20	ENSAPLP00000029187	ENSAPLP00000003338	Rho GTPase activating protein 40.	Uncharacterized protein.	0.469
ARHGAP40	U3I7X3_ANAPP	ENSAPLP00000029187	ENSAPLP00000003344	Rho GTPase activating protein 40.	Rho-GAP domain-containing protein.	0.469
GTF2E2	ARHGAP20	ENSAPLP00000001961	ENSAPLP00000003338	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Uncharacterized protein.	0.438
GTF2E2	RIOK1	ENSAPLP00000001961	ENSAPLP00000003750	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	RIO kinase 1.	0.747
GTF2E2	U3I7X3_ANAPP	ENSAPLP00000001961	ENSAPLP00000003344	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Rho-GAP domain-containing protein.	0.438
RHOA	ARHGAP20	ENSAPLP00000014536	ENSAPLP00000003338	Ras homolog family member A.	Uncharacterized protein.	0.479
RHOA	RHPN1	ENSAPLP00000014536	ENSAPLP00000010875	Ras homolog family member A.	Rhophilin Rho GTPase binding protein 1.	0.548
RHOA	U3I7X3_ANAPP	ENSAPLP00000014536	ENSAPLP00000003344	Ras homolog family member A.	Rho-GAP domain-containing protein.	0.479
RHOB	ARHGAP20	ENSAPLP00000019696	ENSAPLP00000003338	Ras homolog family member B.	Uncharacterized protein.	0.479
RHOB	RHPN1	ENSAPLP00000019696	ENSAPLP00000010875	Ras homolog family member B.	Rhophilin Rho GTPase binding protein 1.	0.548