RNF14 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNF14

RBR-type E3 ubiquitin transferase. (474 aa)

Predicted Functional Partners:

AR

0.962

ATP5PO

0.742

CREBRF

0.667

RNF126

0.602

RNF138

0.566

RPS27A

0.552

CUEDC1

0.547

NDFIP1

0.545

NDUFA6

0.545

WSB2

0.534

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AR	RNF14	ENSAPLP00000006185	ENSAPLP00000003410	Androgen receptor.	RBR-type E3 ubiquitin transferase.	0.962
ATP5PO	NDUFA6	ENSAPLP00000006726	ENSAPLP00000006523	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.878
ATP5PO	RNF138	ENSAPLP00000006726	ENSAPLP00000022906	Uncharacterized protein.	Ring finger protein 138.	0.416
ATP5PO	RNF14	ENSAPLP00000006726	ENSAPLP00000003410	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.742
CREBRF	RNF14	ENSAPLP00000026027	ENSAPLP00000003410	CREB3 regulatory factor.	RBR-type E3 ubiquitin transferase.	0.667
CUEDC1	RNF14	ENSAPLP00000025593	ENSAPLP00000003410	CUE domain containing 1.	RBR-type E3 ubiquitin transferase.	0.547
NDFIP1	NDUFA6	ENSAPLP00000003682	ENSAPLP00000006523	Nedd4 family interacting protein 1.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.661
NDFIP1	RNF14	ENSAPLP00000003682	ENSAPLP00000003410	Nedd4 family interacting protein 1.	RBR-type E3 ubiquitin transferase.	0.545
NDUFA6	ATP5PO	ENSAPLP00000006523	ENSAPLP00000006726	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.878
NDUFA6	NDFIP1	ENSAPLP00000006523	ENSAPLP00000003682	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Nedd4 family interacting protein 1.	0.661
NDUFA6	RNF14	ENSAPLP00000006523	ENSAPLP00000003410	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	RBR-type E3 ubiquitin transferase.	0.545
RNF126	RNF138	ENSAPLP00000027474	ENSAPLP00000022906	Ring finger protein 126.	Ring finger protein 138.	0.572
RNF126	RNF14	ENSAPLP00000027474	ENSAPLP00000003410	Ring finger protein 126.	RBR-type E3 ubiquitin transferase.	0.602
RNF126	RPS27A	ENSAPLP00000027474	ENSAPLP00000004982	Ring finger protein 126.	Ubiquitin-like domain-containing protein.	0.477
RNF126	WSB2	ENSAPLP00000027474	ENSAPLP00000002982	Ring finger protein 126.	WD repeat and SOCS box containing 2.	0.406
RNF138	ATP5PO	ENSAPLP00000022906	ENSAPLP00000006726	Ring finger protein 138.	Uncharacterized protein.	0.416
RNF138	RNF126	ENSAPLP00000022906	ENSAPLP00000027474	Ring finger protein 138.	Ring finger protein 126.	0.572
RNF138	RNF14	ENSAPLP00000022906	ENSAPLP00000003410	Ring finger protein 138.	RBR-type E3 ubiquitin transferase.	0.566
RNF138	RPS27A	ENSAPLP00000022906	ENSAPLP00000004982	Ring finger protein 138.	Ubiquitin-like domain-containing protein.	0.475
RNF14	AR	ENSAPLP00000003410	ENSAPLP00000006185	RBR-type E3 ubiquitin transferase.	Androgen receptor.	0.962