SNRPG protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SNRPG

Small nuclear ribonucleoprotein polypeptide G. (61 aa)

Predicted Functional Partners:

SNRPD3

0.999

SNRPD1

0.999

SNRPF

0.999

PHF5A

0.995

SF3A2

0.994

LSM3

0.990

SNRPC

0.988

SNRNP35

0.987

SNRPA1

0.986

EFTUD2

0.985

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTUD2	LSM3	ENSAPLP00000024550	ENSAPLP00000014331	Elongation factor Tu GTP binding domain containing 2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.883
EFTUD2	PHF5A	ENSAPLP00000024550	ENSAPLP00000018871	Elongation factor Tu GTP binding domain containing 2.	PHD finger protein 5A.	0.883
EFTUD2	SF3A2	ENSAPLP00000024550	ENSAPLP00000032839	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3a subunit 2.	0.900
EFTUD2	SNRNP35	ENSAPLP00000024550	ENSAPLP00000015508	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U11/U12 subunit 35.	0.785
EFTUD2	SNRPA1	ENSAPLP00000024550	ENSAPLP00000005343	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein polypeptide A.	0.928
EFTUD2	SNRPC	ENSAPLP00000024550	ENSAPLP00000024625	Elongation factor Tu GTP binding domain containing 2.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.641
EFTUD2	SNRPD1	ENSAPLP00000024550	ENSAPLP00000012020	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.969
EFTUD2	SNRPD3	ENSAPLP00000024550	ENSAPLP00000008346	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein Sm D3.	0.961
EFTUD2	SNRPF	ENSAPLP00000024550	ENSAPLP00000025809	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein polypeptide F.	0.973
EFTUD2	SNRPG	ENSAPLP00000024550	ENSAPLP00000003436	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein polypeptide G.	0.985
LSM3	EFTUD2	ENSAPLP00000014331	ENSAPLP00000024550	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Elongation factor Tu GTP binding domain containing 2.	0.883
LSM3	PHF5A	ENSAPLP00000014331	ENSAPLP00000018871	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PHD finger protein 5A.	0.917
LSM3	SF3A2	ENSAPLP00000014331	ENSAPLP00000032839	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3a subunit 2.	0.806
LSM3	SNRNP35	ENSAPLP00000014331	ENSAPLP00000015508	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein U11/U12 subunit 35.	0.483
LSM3	SNRPA1	ENSAPLP00000014331	ENSAPLP00000005343	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein polypeptide A.	0.891
LSM3	SNRPD1	ENSAPLP00000014331	ENSAPLP00000012020	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.976
LSM3	SNRPD3	ENSAPLP00000014331	ENSAPLP00000008346	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.990
LSM3	SNRPF	ENSAPLP00000014331	ENSAPLP00000025809	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein polypeptide F.	0.965
LSM3	SNRPG	ENSAPLP00000014331	ENSAPLP00000003436	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein polypeptide G.	0.990
PHF5A	EFTUD2	ENSAPLP00000018871	ENSAPLP00000024550	PHD finger protein 5A.	Elongation factor Tu GTP binding domain containing 2.	0.883