Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3B1Splicing factor 3b subunit 1. (1178 aa)    
Predicted Functional Partners:
SF3B3
Splicing factor 3b subunit 3.
   
 0.999
SF3B4
Splicing factor 3b subunit 4.
    
 0.999
SF3B6
Splicing factor 3b subunit 6.
   
 0.997
SF3A2
Splicing factor 3a subunit 2.
   
 0.995
U3ISZ0_ANAPP
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.993
PHF5A
PHD finger protein 5A.
   
 0.993
DHX15
DEAH-box helicase 15.
   
 0.992
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.991
SF3A3
Splicing factor 3a subunit 3.
   
 0.991
SF3A1
Splicing factor 3a subunit 1.
   
 0.990
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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