STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX29Sorting nexin 29. (739 aa)    
Predicted Functional Partners:
PREX1
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1.
     
 0.723
RIMS4
Regulating synaptic membrane exocytosis 4.
   
  
 0.690
SNX21
Sorting nexin family member 21.
   
 
 0.676
AP2M1
AP-2 complex subunit mu; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but i [...]
   
   0.659
AKAP12
A-kinase anchoring protein 12.
      
 0.657
MAP3K14
Mitogen-activated protein kinase kinase kinase 14.
      
 0.587
SNX20
Sorting nexin 20.
   
 
 0.584
RPL21
Uncharacterized protein.
     
 0.571
ZMAT5
Zinc finger matrin-type 5.
      
 0.564
COG5
Component of oligomeric golgi complex 5.
      
 0.555
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.