Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VAT1Vesicle amine transport 1. (390 aa)    
Predicted Functional Partners:
ENSAPLP00000018986
PKS_AT domain-containing protein.
 
 0.937
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
   
 0.643
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
   
 0.635
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
   
 0.611
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
 0.569
UBLCP1
Ubiquitin like domain containing CTD phosphatase 1.
   
 
 0.565
BCAS1
Breast carcinoma amplified sequence 1.
      
 0.494
PEX7
Peroxisomal biogenesis factor 7.
   
 
 0.479
TBCA
Tubulin-specific chaperone A; Belongs to the TBCA family.
      
 0.479
ALDH5A1
Aldehyde dehydrogenase 5 family member A1.
   
 0.475
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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