STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAT1Vesicle amine transport 1. (390 aa)    
Predicted Functional Partners:
ENSAPLP00000018986
PKS_AT domain-containing protein.
 
 0.947
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
   
 0.664
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
   
 0.657
UBLCP1
Ubiquitin like domain containing CTD phosphatase 1.
    
 
 0.637
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
   
 0.634
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
 0.546
QSOX2
Sulfhydryl oxidase.
      
 0.545
OGFOD3
2-oxoglutarate and iron dependent oxygenase domain containing 3.
      
 0.539
ERO1B
Endoplasmic reticulum oxidoreductase 1 beta.
   
  
 0.527
FASN
Fatty acid synthase.
  
0.498
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.