STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRC6Leucine rich repeat containing 6. (418 aa)    
Predicted Functional Partners:
ZMYND10
Zinc finger MYND-type containing 10.
     
 0.892
ARMC4
Armadillo repeat containing 4.
    
 
 0.794
CCDC39
Coiled-coil domain containing 39.
   
 0.776
DNAAF4
Dynein axonemal assembly factor 4.
    
 
 0.768
DNALI1
Dynein axonemal light intermediate chain 1.
   
 
 0.759
U3J0F4_ANAPP
Uncharacterized protein.
    
 
 0.755
SPAG1
Sperm associated antigen 1.
    
 
 0.720
DNAAF1
Dynein assembly factor 1, axonemal.
    
 0.719
DNAI1
Dynein axonemal intermediate chain 1.
    
 
 0.713
U3I2X0_ANAPP
Uncharacterized protein.
    
 
 0.708
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.