STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT2AtRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (660 aa)    
Predicted Functional Partners:
ZDHHC8
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.747
DGCR2
DiGeorge syndrome critical region gene 2.
      
 0.715
TRMT61A
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.688
TANGO2
Transport and golgi organization 2 homolog.
      
 0.678
GNB1L
G protein subunit beta 1 like.
   
 
 0.636
MRPL40
Mitochondrial ribosomal protein L40.
   
  
 0.633
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
      
 0.625
RANBP1
RAN binding protein 1.
   
  
 0.619
U3IK07_ANAPP
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
     
 0.581
TBL3
Transducin beta like 3.
   
    0.579
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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