NELFA protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NELFA

Negative elongation factor complex member A. (539 aa)

Predicted Functional Partners:

NELFCD

0.996

NELFB

0.994

SUPT5H

0.970

SUPT4H1

0.924

ENSAPLP00000019176

0.915

POLR2C

0.914

POLR2B

0.914

POLR2H

0.914

POLR2F

0.855

POLR2K

0.848

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPLP00000019176	NELFA	ENSAPLP00000019176	ENSAPLP00000003660	annotation not available	Negative elongation factor complex member A.	0.915
ENSAPLP00000019176	NELFB	ENSAPLP00000019176	ENSAPLP00000014619	annotation not available	Negative elongation factor complex member B.	0.874
ENSAPLP00000019176	NELFCD	ENSAPLP00000019176	ENSAPLP00000014739	annotation not available	Negative elongation factor complex member C/D.	0.919
ENSAPLP00000019176	POLR2B	ENSAPLP00000019176	ENSAPLP00000020855	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
ENSAPLP00000019176	POLR2C	ENSAPLP00000019176	ENSAPLP00000004999	annotation not available	RNA polymerase II subunit C.	0.996
ENSAPLP00000019176	POLR2F	ENSAPLP00000019176	ENSAPLP00000015095	annotation not available	RNA polymerase II subunit F.	0.996
ENSAPLP00000019176	POLR2H	ENSAPLP00000019176	ENSAPLP00000029477	annotation not available	RNA polymerase II subunit H.	0.996
ENSAPLP00000019176	POLR2K	ENSAPLP00000019176	ENSAPLP00000017392	annotation not available	RNA polymerase II subunit K.	0.996
ENSAPLP00000019176	SUPT4H1	ENSAPLP00000019176	ENSAPLP00000012278	annotation not available	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.991
ENSAPLP00000019176	SUPT5H	ENSAPLP00000019176	ENSAPLP00000004928	annotation not available	SPT5 homolog, DSIF elongation factor subunit.	0.992
NELFA	ENSAPLP00000019176	ENSAPLP00000003660	ENSAPLP00000019176	Negative elongation factor complex member A.	annotation not available	0.915
NELFA	NELFB	ENSAPLP00000003660	ENSAPLP00000014619	Negative elongation factor complex member A.	Negative elongation factor complex member B.	0.994
NELFA	NELFCD	ENSAPLP00000003660	ENSAPLP00000014739	Negative elongation factor complex member A.	Negative elongation factor complex member C/D.	0.996
NELFA	POLR2B	ENSAPLP00000003660	ENSAPLP00000020855	Negative elongation factor complex member A.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.914
NELFA	POLR2C	ENSAPLP00000003660	ENSAPLP00000004999	Negative elongation factor complex member A.	RNA polymerase II subunit C.	0.914
NELFA	POLR2F	ENSAPLP00000003660	ENSAPLP00000015095	Negative elongation factor complex member A.	RNA polymerase II subunit F.	0.855
NELFA	POLR2H	ENSAPLP00000003660	ENSAPLP00000029477	Negative elongation factor complex member A.	RNA polymerase II subunit H.	0.914
NELFA	POLR2K	ENSAPLP00000003660	ENSAPLP00000017392	Negative elongation factor complex member A.	RNA polymerase II subunit K.	0.848
NELFA	SUPT4H1	ENSAPLP00000003660	ENSAPLP00000012278	Negative elongation factor complex member A.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.924
NELFA	SUPT5H	ENSAPLP00000003660	ENSAPLP00000004928	Negative elongation factor complex member A.	SPT5 homolog, DSIF elongation factor subunit.	0.970