Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VAMP4Vesicle associated membrane protein 4. (117 aa)    
Predicted Functional Partners:
STX16
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.999
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.999
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.998
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.990
NAPG
NSF attachment protein gamma.
   
 0.989
STX8
Syntaxin 8.
    
 0.982
SNAP29
Synaptosome associated protein 29.
   
 0.977
NAPB
NSF attachment protein beta.
   
 0.974
STX18
Syntaxin 18.
    
 0.972
STX7
Syntaxin 7; Belongs to the syntaxin family.
    
 0.952
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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