STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KDM3ALysine demethylase 3A. (1328 aa)    
Predicted Functional Partners:
EPB42
Erythrocyte membrane protein band 4.2.
      
 0.719
ACTR10
Actin related protein 10; Belongs to the actin family.
      
 0.719
SPINT1
Uncharacterized protein.
      
 0.714
EIF5A2
Eukaryotic translation initiation factor 5A.
      
 0.482
RBKS
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      
 0.450
U3I833_ANAPP
Histone H3; Belongs to the histone H3 family.
    
 0.436
ENSAPLP00000026892
annotation not available
    
 0.436
HIST2H3PS2
Histone cluster 2 H3 pseudogene 2.
    
 0.436
ENSAPLP00000030836
Histone domain-containing protein.
    
 0.436
ASB6
Ankyrin repeat and SOCS box containing 6.
    
 
 0.426
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.