STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (238 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.928
PHF5A
PHD finger protein 5A.
     
 0.926
DDX46
DEAD-box helicase 46.
   
 
 0.881
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
     
 0.880
RBM17
RNA binding motif protein 17.
   
 
  0.854
U2SURP
U2 snRNP associated SURP domain containing.
    
  0.849
PUF60
Poly(U) binding splicing factor 60.
   
 0.807
SF3B6
Splicing factor 3b subunit 6.
    
 0.796
SF3B1
Splicing factor 3b subunit 1.
   
 0.790
DHX15
DEAH-box helicase 15.
   
 
  0.786
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.