Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM42Tripartite motif containing 42. (732 aa)    
Predicted Functional Partners:
FSD2
Fibronectin type III and SPRY domain containing 2.
      
 0.753
RNF207
Ring finger protein 207.
      
 0.682
U3ILH2_ANAPP
Uncharacterized protein.
    
 
 0.649
TRIM9
Uncharacterized protein.
     
 0.647
TRIM23
Tripartite motif containing 23.
    
 0.632
TRIM54
Tripartite motif containing 54.
    
 
 0.611
TRIM8
Tripartite motif containing 8.
      
 0.508
PTPA
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 
 0.486
TRIM29
Tripartite motif containing 29.
      
 0.472
BSPRY
B-box and SPRY domain containing.
      
 0.469
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.