Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCEA1Transcription elongation factor A1. (304 aa)    
Predicted Functional Partners:
POLR2F
RNA polymerase II subunit F.
   
 0.909
GTF2H3
General transcription factor IIH subunit 3.
    
 0.905
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.893
POLR2E
RNA polymerase II subunit E.
   
 0.885
POLR2K
RNA polymerase II subunit K.
   
 0.880
SUPT4H1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
   
 0.878
POLR2J
RNA polymerase II subunit J.
   
 0.873
POLR2H
RNA polymerase II subunit H.
   
 0.873
POLR2C
RNA polymerase II subunit C.
   
 0.863
POLR2L
RNA polymerase II subunit L.
   
 0.860
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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