STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF141Ring finger protein 141. (243 aa)    
Predicted Functional Partners:
SAMD11
Sterile alpha motif domain containing 11.
      
 0.719
CENPM
Centromere protein M.
   
  
 0.669
SPATA4
Spermatogenesis associated 4.
      
 0.653
TCTE3
T-complex-associated-testis-expressed 3.
      
 0.653
MRVI1
Murine retrovirus integration site 1 homolog.
 
  
 0.643
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
      
 0.634
CCDC42
DUF4200 domain-containing protein.
      
 0.633
PERM1
Uncharacterized protein.
    
 
 0.631
RGS12
Uncharacterized protein.
    
 
 0.621
RSPH1
Radial spoke head component 1.
      
 0.620
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.