STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF141Ring finger protein 141. (243 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
     
 0.757
RSPH1
Radial spoke head component 1.
      
 0.700
CCDC42
DUF4200 domain-containing protein.
      
 0.697
TCTE3
T-complex-associated-testis-expressed 3.
      
 0.697
TSSK6
Testis specific serine kinase 6; Belongs to the protein kinase superfamily.
      
 0.683
CAPZA3
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
      
 0.678
KCNU1
Potassium calcium-activated channel subfamily U member 1.
      
 0.678
SPATA4
Spermatogenesis associated 4.
      
 0.676
TSSK2
Testis specific serine kinase 2; Belongs to the protein kinase superfamily.
      
 0.665
RPS27A
Ubiquitin-like domain-containing protein.
    
  0.540
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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