Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDK1Sidekick cell adhesion molecule 1. (2025 aa)    
Predicted Functional Partners:
SLC35F1
Solute carrier family 35 member F1.
      
 0.863
BICC1
BicC family RNA binding protein 1.
      
 0.769
ZNF516
Zinc finger protein 516.
     
 0.708
APOLD1
Apolipoprotein L domain containing 1.
     
 0.670
DENND6B
DENN domain containing 6B.
      
 0.666
U3I079_ANAPP
Uncharacterized protein.
      
 0.624
HINFP
Histone H4 transcription factor.
      
 0.624
ITGB8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.608
SLC35F2
Solute carrier family 35 member F2.
      
 0.583
MRE11
MRE11 homolog, double strand break repair nuclease.
    
 0.574
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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