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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U3IAT1_ANAPPFibrillar collagen NC1 domain-containing protein. (113 aa)    
Predicted Functional Partners:
ACAN
Aggrecan.
    
 0.888
COL13A1
Collagen type XIII alpha 1 chain.
 
  
  0.867
SOX9
SRY-box transcription factor 9.
    
 
 0.845
COL9A3
Uncharacterized protein.
 
  
 0.831
COL23A1
Uncharacterized protein.
 
  
  0.829
COL8A1
Collagen type VIII alpha 1 chain.
 
 
 
 0.825
COL10A1
C1q domain-containing protein.
 
  
 0.804
COL25A1
Collagen type XXV alpha 1 chain.
 
  
  0.802
COL9A2
Collagen type IX alpha 2 chain.
 
  
 0.769
COL8A2
Collagen type VIII alpha 2 chain.
 
  
  0.693
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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