Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
USP34Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family. (3522 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.923
RPS27A
Ubiquitin-like domain-containing protein.
   
 0.863
ASH1L
ASH1 like histone lysine methyltransferase.
   
 
 0.857
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
   
 0.828
ENSAPLP00000023897
Uncharacterized protein.
   
 0.780
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
   0.749
SETD2
Uncharacterized protein.
   
   0.737
NIPBL
Nipped-B protein.
   
    0.722
BIRC6
Baculoviral IAP repeat containing 6.
   
 0.712
USP9X
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 0.708
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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