CSDC2 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CSDC2

Cold shock domain containing C2. (153 aa)

Predicted Functional Partners:

U3J237_ANAPP

0.621

PJA2

0.551

SSRP1

0.551

DDX28

0.547

CIP2A

0.544

DDX6

0.543

SNRPF

0.510

H1-0

0.508

SNRPG

0.502

HIKESHI

0.482

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIP2A	CSDC2	ENSAPLP00000013778	ENSAPLP00000004599	Cell proliferation regulating inhibitor of protein phosphatase 2A.	Cold shock domain containing C2.	0.544
CIP2A	PJA2	ENSAPLP00000013778	ENSAPLP00000011082	Cell proliferation regulating inhibitor of protein phosphatase 2A.	RING-type domain-containing protein.	0.452
CSDC2	CIP2A	ENSAPLP00000004599	ENSAPLP00000013778	Cold shock domain containing C2.	Cell proliferation regulating inhibitor of protein phosphatase 2A.	0.544
CSDC2	DDX28	ENSAPLP00000004599	ENSAPLP00000023754	Cold shock domain containing C2.	DEAD-box helicase 28.	0.547
CSDC2	DDX6	ENSAPLP00000004599	ENSAPLP00000006939	Cold shock domain containing C2.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.543
CSDC2	H1-0	ENSAPLP00000004599	ENSAPLP00000031537	Cold shock domain containing C2.	H1 histone family member 0.	0.508
CSDC2	HIKESHI	ENSAPLP00000004599	ENSAPLP00000020105	Cold shock domain containing C2.	Heat shock protein nuclear import factor hikeshi.	0.482
CSDC2	PJA2	ENSAPLP00000004599	ENSAPLP00000011082	Cold shock domain containing C2.	RING-type domain-containing protein.	0.551
CSDC2	SNRPF	ENSAPLP00000004599	ENSAPLP00000025809	Cold shock domain containing C2.	Small nuclear ribonucleoprotein polypeptide F.	0.510
CSDC2	SNRPG	ENSAPLP00000004599	ENSAPLP00000003436	Cold shock domain containing C2.	Small nuclear ribonucleoprotein polypeptide G.	0.502
CSDC2	SSRP1	ENSAPLP00000004599	ENSAPLP00000015530	Cold shock domain containing C2.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.551
CSDC2	U3J237_ANAPP	ENSAPLP00000004599	ENSAPLP00000013564	Cold shock domain containing C2.	Uncharacterized protein.	0.621
DDX28	CSDC2	ENSAPLP00000023754	ENSAPLP00000004599	DEAD-box helicase 28.	Cold shock domain containing C2.	0.547
DDX6	CSDC2	ENSAPLP00000006939	ENSAPLP00000004599	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Cold shock domain containing C2.	0.543
H1-0	CSDC2	ENSAPLP00000031537	ENSAPLP00000004599	H1 histone family member 0.	Cold shock domain containing C2.	0.508
H1-0	SSRP1	ENSAPLP00000031537	ENSAPLP00000015530	H1 histone family member 0.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.522
HIKESHI	CSDC2	ENSAPLP00000020105	ENSAPLP00000004599	Heat shock protein nuclear import factor hikeshi.	Cold shock domain containing C2.	0.482
PJA2	CIP2A	ENSAPLP00000011082	ENSAPLP00000013778	RING-type domain-containing protein.	Cell proliferation regulating inhibitor of protein phosphatase 2A.	0.452
PJA2	CSDC2	ENSAPLP00000011082	ENSAPLP00000004599	RING-type domain-containing protein.	Cold shock domain containing C2.	0.551
SNRPF	CSDC2	ENSAPLP00000025809	ENSAPLP00000004599	Small nuclear ribonucleoprotein polypeptide F.	Cold shock domain containing C2.	0.510