LSM8 protein (Anas platyrhynchos) - STRING interaction network

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LSM8

U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)

Predicted Functional Partners:

LSM5

0.995

LSM6

0.995

LSM3

0.994

LSM4

0.993

LSM7

0.993

PRPF3

0.985

SNRPG

0.980

PRPF4

0.980

SNRPD3

0.980

EFTUD2

0.980

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTUD2	LSM3	ENSAPLP00000024550	ENSAPLP00000014331	Elongation factor Tu GTP binding domain containing 2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.975
EFTUD2	LSM4	ENSAPLP00000024550	ENSAPLP00000018959	Elongation factor Tu GTP binding domain containing 2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.926
EFTUD2	LSM5	ENSAPLP00000024550	ENSAPLP00000007822	Elongation factor Tu GTP binding domain containing 2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.938
EFTUD2	LSM6	ENSAPLP00000024550	ENSAPLP00000012384	Elongation factor Tu GTP binding domain containing 2.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.909
EFTUD2	LSM7	ENSAPLP00000024550	ENSAPLP00000025578	Elongation factor Tu GTP binding domain containing 2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.941
EFTUD2	LSM8	ENSAPLP00000024550	ENSAPLP00000004665	Elongation factor Tu GTP binding domain containing 2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.980
EFTUD2	PRPF3	ENSAPLP00000024550	ENSAPLP00000001929	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 3.	0.987
EFTUD2	PRPF4	ENSAPLP00000024550	ENSAPLP00000006166	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 4.	0.985
EFTUD2	SNRPD3	ENSAPLP00000024550	ENSAPLP00000008346	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein Sm D3.	0.990
EFTUD2	SNRPG	ENSAPLP00000024550	ENSAPLP00000003436	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein polypeptide G.	0.989
LSM3	EFTUD2	ENSAPLP00000014331	ENSAPLP00000024550	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Elongation factor Tu GTP binding domain containing 2.	0.975
LSM3	LSM4	ENSAPLP00000014331	ENSAPLP00000018959	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	ENSAPLP00000014331	ENSAPLP00000007822	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM6	ENSAPLP00000014331	ENSAPLP00000012384	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM3	LSM7	ENSAPLP00000014331	ENSAPLP00000025578	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM3	LSM8	ENSAPLP00000014331	ENSAPLP00000004665	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
LSM3	PRPF3	ENSAPLP00000014331	ENSAPLP00000001929	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA processing factor 3.	0.978
LSM3	PRPF4	ENSAPLP00000014331	ENSAPLP00000006166	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA processing factor 4.	0.976
LSM3	SNRPD3	ENSAPLP00000014331	ENSAPLP00000008346	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.991
LSM3	SNRPG	ENSAPLP00000014331	ENSAPLP00000003436	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein polypeptide G.	0.978

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