STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMJD4Jumonji domain containing 4. (427 aa)    
Predicted Functional Partners:
ETF1
Eukaryotic translation termination factor 1.
    
 0.985
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.666
HSPBAP1
HSPB1 associated protein 1.
      
 0.597
RIOX1
Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase.
      
 0.586
ALKBH8
AlkB homolog 8, tRNA methyltransferase.
   
  
 0.583
MCCC2
Methylcrotonoyl-CoA carboxylase 2.
      
 0.566
ENSAPLP00000016663
JmjC domain-containing protein.
      
 0.560
VPS54
VPS54 subunit of GARP complex.
      
 0.548
SNAP47
Synaptosome associated protein 47.
      
 0.548
PREPL
Prolyl endopeptidase like.
      
 0.545
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.