Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM7RRM domain-containing protein. (287 aa)    
Predicted Functional Partners:
ZCCHC8
Zinc finger CCHC-type containing 8.
   
 0.998
MTREX
Mtr4 exosome RNA helicase.
    
 0.998
EXOSC8
Exosome component 8.
    
 0.989
EXOSC3
Exosome component 3.
    
 0.985
EXOSC7
Exosome component 7.
    
 0.977
EXOSC2
Exosome component 2.
    
 0.976
C1D
C1D nuclear receptor corepressor.
   
 0.967
EXOSC10
Exosome component 10.
    
 0.964
EXOSC5
Exosome component 5.
   
 0.938
EXOSC6
Exosome component 6.
   
 0.935
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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