RNF4 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNF4

Ring finger protein 4. (192 aa)

Predicted Functional Partners:

SUMO1

0.978

SP1

0.941

ENSAPLP00000029099

0.921

SUMO2

0.875

U3J5I9_ANAPP

0.871

UBE2I

0.859

ENSAPLP00000024647

0.851

ENSAPLP00000030796

0.851

UBE2W

0.842

AR

0.834

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AR	RNF4	ENSAPLP00000006185	ENSAPLP00000004802	Androgen receptor.	Ring finger protein 4.	0.834
AR	SP1	ENSAPLP00000006185	ENSAPLP00000027518	Androgen receptor.	Sp1 transcription factor.	0.934
AR	SUMO1	ENSAPLP00000006185	ENSAPLP00000022646	Androgen receptor.	Small ubiquitin like modifier 1.	0.573
AR	UBE2I	ENSAPLP00000006185	ENSAPLP00000016007	Androgen receptor.	Ubiquitin conjugating enzyme E2 I; Belongs to the ubiquitin-conjugating enzyme family.	0.883
ENSAPLP00000024647	ENSAPLP00000029099	ENSAPLP00000024647	ENSAPLP00000029099	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.499
ENSAPLP00000024647	RNF4	ENSAPLP00000024647	ENSAPLP00000004802	Uncharacterized protein.	Ring finger protein 4.	0.851
ENSAPLP00000024647	SP1	ENSAPLP00000024647	ENSAPLP00000027518	Uncharacterized protein.	Sp1 transcription factor.	0.654
ENSAPLP00000024647	SUMO1	ENSAPLP00000024647	ENSAPLP00000022646	Uncharacterized protein.	Small ubiquitin like modifier 1.	0.889
ENSAPLP00000024647	SUMO2	ENSAPLP00000024647	ENSAPLP00000006410	Uncharacterized protein.	Small ubiquitin-related modifier.	0.499
ENSAPLP00000024647	UBE2I	ENSAPLP00000024647	ENSAPLP00000016007	Uncharacterized protein.	Ubiquitin conjugating enzyme E2 I; Belongs to the ubiquitin-conjugating enzyme family.	0.914
ENSAPLP00000029099	ENSAPLP00000024647	ENSAPLP00000029099	ENSAPLP00000024647	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.499
ENSAPLP00000029099	ENSAPLP00000030796	ENSAPLP00000029099	ENSAPLP00000030796	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.499
ENSAPLP00000029099	RNF4	ENSAPLP00000029099	ENSAPLP00000004802	Ubiquitin-like domain-containing protein.	Ring finger protein 4.	0.921
ENSAPLP00000029099	SUMO1	ENSAPLP00000029099	ENSAPLP00000022646	Ubiquitin-like domain-containing protein.	Small ubiquitin like modifier 1.	0.741
ENSAPLP00000029099	U3J5I9_ANAPP	ENSAPLP00000029099	ENSAPLP00000014766	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.642
ENSAPLP00000029099	UBE2I	ENSAPLP00000029099	ENSAPLP00000016007	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 I; Belongs to the ubiquitin-conjugating enzyme family.	0.958
ENSAPLP00000029099	UBE2W	ENSAPLP00000029099	ENSAPLP00000004522	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.456
ENSAPLP00000030796	ENSAPLP00000029099	ENSAPLP00000030796	ENSAPLP00000029099	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.499
ENSAPLP00000030796	RNF4	ENSAPLP00000030796	ENSAPLP00000004802	Uncharacterized protein.	Ring finger protein 4.	0.851
ENSAPLP00000030796	SP1	ENSAPLP00000030796	ENSAPLP00000027518	Uncharacterized protein.	Sp1 transcription factor.	0.654