UBN1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBN1

Ubinuclein 1. (1135 aa)

Predicted Functional Partners:

HIRA

0.983

ASF1A

0.983

CABIN1

0.871

ENSAPLP00000029227

0.871

MAN1B1

0.611

HTATSF1

0.602

ZMYM3

0.595

PUS7

0.586

ATRX

0.546

PDPR

0.524

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASF1A	ATRX	ENSAPLP00000018444	ENSAPLP00000006058	Anti-silencing function 1A histone chaperone.	ATRX chromatin remodeler.	0.511
ASF1A	CABIN1	ENSAPLP00000018444	ENSAPLP00000005455	Anti-silencing function 1A histone chaperone.	TPR_REGION domain-containing protein.	0.860
ASF1A	ENSAPLP00000029227	ENSAPLP00000018444	ENSAPLP00000029227	Anti-silencing function 1A histone chaperone.	MEF2_binding domain-containing protein.	0.860
ASF1A	HIRA	ENSAPLP00000018444	ENSAPLP00000003741	Anti-silencing function 1A histone chaperone.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.997
ASF1A	UBN1	ENSAPLP00000018444	ENSAPLP00000004846	Anti-silencing function 1A histone chaperone.	Ubinuclein 1.	0.983
ATRX	ASF1A	ENSAPLP00000006058	ENSAPLP00000018444	ATRX chromatin remodeler.	Anti-silencing function 1A histone chaperone.	0.511
ATRX	HIRA	ENSAPLP00000006058	ENSAPLP00000003741	ATRX chromatin remodeler.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.534
ATRX	UBN1	ENSAPLP00000006058	ENSAPLP00000004846	ATRX chromatin remodeler.	Ubinuclein 1.	0.546
CABIN1	ASF1A	ENSAPLP00000005455	ENSAPLP00000018444	TPR_REGION domain-containing protein.	Anti-silencing function 1A histone chaperone.	0.860
CABIN1	ENSAPLP00000029227	ENSAPLP00000005455	ENSAPLP00000029227	TPR_REGION domain-containing protein.	MEF2_binding domain-containing protein.	0.933
CABIN1	HIRA	ENSAPLP00000005455	ENSAPLP00000003741	TPR_REGION domain-containing protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.880
CABIN1	UBN1	ENSAPLP00000005455	ENSAPLP00000004846	TPR_REGION domain-containing protein.	Ubinuclein 1.	0.871
ENSAPLP00000029227	ASF1A	ENSAPLP00000029227	ENSAPLP00000018444	MEF2_binding domain-containing protein.	Anti-silencing function 1A histone chaperone.	0.860
ENSAPLP00000029227	CABIN1	ENSAPLP00000029227	ENSAPLP00000005455	MEF2_binding domain-containing protein.	TPR_REGION domain-containing protein.	0.933
ENSAPLP00000029227	HIRA	ENSAPLP00000029227	ENSAPLP00000003741	MEF2_binding domain-containing protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.880
ENSAPLP00000029227	UBN1	ENSAPLP00000029227	ENSAPLP00000004846	MEF2_binding domain-containing protein.	Ubinuclein 1.	0.871
HIRA	ASF1A	ENSAPLP00000003741	ENSAPLP00000018444	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Anti-silencing function 1A histone chaperone.	0.997
HIRA	ATRX	ENSAPLP00000003741	ENSAPLP00000006058	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	ATRX chromatin remodeler.	0.534
HIRA	CABIN1	ENSAPLP00000003741	ENSAPLP00000005455	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	TPR_REGION domain-containing protein.	0.880
HIRA	ENSAPLP00000029227	ENSAPLP00000003741	ENSAPLP00000029227	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	MEF2_binding domain-containing protein.	0.880