LXN protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LXN

Latexin. (273 aa)

Predicted Functional Partners:

NTNG2

0.545

ENSAPLP00000029499

0.545

BPIFB4

0.505

U3ICI1_ANAPP

0.501

GFM1

0.454

CUX2

0.409

NPEPL1

0.404

LIX1

0.404

TCIM

0.401

OMA1

0.400

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPIFB4	LXN	ENSAPLP00000027102	ENSAPLP00000004892	BPI fold containing family B member 4.	Latexin.	0.505
BPIFB4	U3ICI1_ANAPP	ENSAPLP00000027102	ENSAPLP00000004953	BPI fold containing family B member 4.	C-type lectin domain-containing protein.	0.506
CUX2	LIX1	ENSAPLP00000003909	ENSAPLP00000009000	Homeobox protein cut-like.	Limb and CNS expressed 1.	0.482
CUX2	LXN	ENSAPLP00000003909	ENSAPLP00000004892	Homeobox protein cut-like.	Latexin.	0.409
ENSAPLP00000029499	LXN	ENSAPLP00000029499	ENSAPLP00000004892	Uncharacterized protein.	Latexin.	0.545
ENSAPLP00000029499	NTNG2	ENSAPLP00000029499	ENSAPLP00000016020	Uncharacterized protein.	Netrin G2.	0.917
GFM1	LXN	ENSAPLP00000004604	ENSAPLP00000004892	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]	Latexin.	0.454
GFM1	U3ICI1_ANAPP	ENSAPLP00000004604	ENSAPLP00000004953	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]	C-type lectin domain-containing protein.	0.410
LIX1	CUX2	ENSAPLP00000009000	ENSAPLP00000003909	Limb and CNS expressed 1.	Homeobox protein cut-like.	0.482
LIX1	LXN	ENSAPLP00000009000	ENSAPLP00000004892	Limb and CNS expressed 1.	Latexin.	0.404
LIX1	OMA1	ENSAPLP00000009000	ENSAPLP00000006012	Limb and CNS expressed 1.	OMA1 zinc metallopeptidase.	0.563
LXN	BPIFB4	ENSAPLP00000004892	ENSAPLP00000027102	Latexin.	BPI fold containing family B member 4.	0.505
LXN	CUX2	ENSAPLP00000004892	ENSAPLP00000003909	Latexin.	Homeobox protein cut-like.	0.409
LXN	ENSAPLP00000029499	ENSAPLP00000004892	ENSAPLP00000029499	Latexin.	Uncharacterized protein.	0.545
LXN	GFM1	ENSAPLP00000004892	ENSAPLP00000004604	Latexin.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]	0.454
LXN	LIX1	ENSAPLP00000004892	ENSAPLP00000009000	Latexin.	Limb and CNS expressed 1.	0.404
LXN	NPEPL1	ENSAPLP00000004892	ENSAPLP00000001222	Latexin.	Aminopeptidase like 1.	0.404
LXN	NTNG2	ENSAPLP00000004892	ENSAPLP00000016020	Latexin.	Netrin G2.	0.545
LXN	OMA1	ENSAPLP00000004892	ENSAPLP00000006012	Latexin.	OMA1 zinc metallopeptidase.	0.400
LXN	TCIM	ENSAPLP00000004892	ENSAPLP00000000680	Latexin.	Transcriptional and immune response regulator.	0.401