Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GGPS1Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family. (438 aa)    
Predicted Functional Partners:
FDPS
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.989
ENSAPLP00000018146
MDD_C domain-containing protein.
  
 0.975
ENSAPLP00000030953
Nudix hydrolase domain-containing protein.
  
 
 0.972
PDSS2
Decaprenyl diphosphate synthase subunit 2; Belongs to the FPP/GGPP synthase family.
     
 0.970
PDSS1
Decaprenyl diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family.
     
0.959
DHDDS
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.951
FNTA
Farnesyltransferase, CAAX box, alpha.
     
 0.943
NUS1
NUS1 dehydrodolichyl diphosphate synthase subunit.
  
 
 0.942
FDFT1
Uncharacterized protein.
  
 0.923
PRPF18
SFM domain-containing protein.
 
      0.888
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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