Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38APre-mRNA processing factor 38A. (309 aa)    
Predicted Functional Partners:
MFAP1
Microfibril associated protein 1.
   
 0.995
PLRG1
Pleiotropic regulator 1.
 
 
 
 0.932
ZMAT2
Zinc finger matrin-type 2.
   
 0.915
TCERG1
Transcription elongation regulator 1.
   
 0.915
PRPF38B
Uncharacterized protein.
   
 
 
0.903
TCERG1L
Transcription elongation regulator 1 like.
   
 0.886
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 
 0.861
RNPS1
RNA binding protein with serine rich domain 1.
   
 
 0.856
WBP4
WW domain binding protein 4.
   
 
 0.835
U3J272_ANAPP
RRM domain-containing protein.
   
 
 0.824
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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