REXO4 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

REXO4

REX4 homolog, 3'-5' exonuclease. (438 aa)

Predicted Functional Partners:

RBM34

0.916

FAM32A

0.865

CEBPZ

0.841

ENSAPLP00000022103

0.837

U3IPR8_ANAPP

0.822

DDX24

0.812

RPL7L1

0.792

RPL8

0.781

DDX55

0.760

NOLC1

0.754

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPZ	DDX24	ENSAPLP00000014102	ENSAPLP00000010851	CCAAT enhancer binding protein zeta.	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	0.960
CEBPZ	DDX55	ENSAPLP00000014102	ENSAPLP00000014945	CCAAT enhancer binding protein zeta.	RNA helicase.	0.769
CEBPZ	ENSAPLP00000022103	ENSAPLP00000014102	ENSAPLP00000022103	CCAAT enhancer binding protein zeta.	Brix domain-containing protein.	0.978
CEBPZ	NOLC1	ENSAPLP00000014102	ENSAPLP00000011571	CCAAT enhancer binding protein zeta.	Nucleolar and coiled-body phosphoprotein 1.	0.877
CEBPZ	RBM34	ENSAPLP00000014102	ENSAPLP00000003859	CCAAT enhancer binding protein zeta.	RNA binding motif protein 34.	0.938
CEBPZ	REXO4	ENSAPLP00000014102	ENSAPLP00000005444	CCAAT enhancer binding protein zeta.	REX4 homolog, 3'-5' exonuclease.	0.841
CEBPZ	RPL7L1	ENSAPLP00000014102	ENSAPLP00000013351	CCAAT enhancer binding protein zeta.	Ribosomal protein L7 like 1.	0.592
CEBPZ	U3IPR8_ANAPP	ENSAPLP00000014102	ENSAPLP00000009241	CCAAT enhancer binding protein zeta.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.922
DDX24	CEBPZ	ENSAPLP00000010851	ENSAPLP00000014102	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	CCAAT enhancer binding protein zeta.	0.960
DDX24	DDX55	ENSAPLP00000010851	ENSAPLP00000014945	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	RNA helicase.	0.832
DDX24	ENSAPLP00000022103	ENSAPLP00000010851	ENSAPLP00000022103	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	Brix domain-containing protein.	0.872
DDX24	RBM34	ENSAPLP00000010851	ENSAPLP00000003859	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	RNA binding motif protein 34.	0.954
DDX24	REXO4	ENSAPLP00000010851	ENSAPLP00000005444	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	REX4 homolog, 3'-5' exonuclease.	0.812
DDX24	RPL7L1	ENSAPLP00000010851	ENSAPLP00000013351	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	Ribosomal protein L7 like 1.	0.651
DDX24	RPL8	ENSAPLP00000010851	ENSAPLP00000014474	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	Ribosomal protein L8.	0.578
DDX24	U3IPR8_ANAPP	ENSAPLP00000010851	ENSAPLP00000009241	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.782
DDX55	CEBPZ	ENSAPLP00000014945	ENSAPLP00000014102	RNA helicase.	CCAAT enhancer binding protein zeta.	0.769
DDX55	DDX24	ENSAPLP00000014945	ENSAPLP00000010851	RNA helicase.	DEAD-box helicase 24; Belongs to the DEAD box helicase family.	0.832
DDX55	ENSAPLP00000022103	ENSAPLP00000014945	ENSAPLP00000022103	RNA helicase.	Brix domain-containing protein.	0.823
DDX55	RBM34	ENSAPLP00000014945	ENSAPLP00000003859	RNA helicase.	RNA binding motif protein 34.	0.713