STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERGEFSecretion regulating guanine nucleotide exchange factor. (356 aa)    
Predicted Functional Partners:
DPH3
Diphthamide biosynthesis 3.
    
 
 0.971
TMEM50B
Transmembrane protein 50B.
      
 0.693
ABCC8
ATP binding cassette subfamily C member 8.
    
 
 0.625
PIGV
GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.
      
 0.621
NUCB2
Nucleobindin 2.
      
 0.611
PIK3C2A
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha; Belongs to the PI3/PI4-kinase family.
      
 0.611
RPS13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
      
 0.609
KCNJ11
Potassium voltage-gated channel subfamily J member 11.
     
 0.608
USH1C
USH1 protein network component harmonin.
    
 
 0.591
TBC1D15
TBC1 domain family member 15.
   
  
 0.590
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.