STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCR8SMCR8-C9orf72 complex subunit. (882 aa)    
Predicted Functional Partners:
WDR41
WD repeat domain 41.
    
 0.996
C9orf72
C9orf72-SMCR8 complex subunit.
    
 0.989
RAB39B
RAB39B, member RAS oncogene family.
    
 0.936
RAB8A
RAB8A, member RAS oncogene family.
    
 0.926
ULK2
Unc-51 like autophagy activating kinase 2.
    
 0.923
TBK1
TANK binding kinase 1.
   
 0.916
TANK
TRAF family member associated NFKB activator.
     
 0.911
ATG13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
    
 0.747
RAB29
RAB29, member RAS oncogene family.
    
 
 0.647
RAB1A
RAB1A, member RAS oncogene family.
      
 0.637
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.