STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPTLC1Serine palmitoyltransferase long chain base subunit 1. (476 aa)    
Predicted Functional Partners:
KDSR
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.994
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
  
0.994
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
  
0.963
SPTSSB
Serine palmitoyltransferase small subunit B.
    
 0.956
ISM1
Isthmin 1.
   
 0.936
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.891
SCARA5
Scavenger receptor class A member 5.
      
 0.855
ORMDL3
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 0.833
PSPH
Phosphoserine phosphatase.
    
 0.824
AGXT
Serine--pyruvate aminotransferase.
    
 0.824
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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