Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TARDBPTAR DNA binding protein. (414 aa)    
Predicted Functional Partners:
C9orf72
C9orf72-SMCR8 complex subunit.
      
 0.933
PRKN
Parkin RBR E3 ubiquitin protein ligase.
    
 
 0.917
TAF15
TATA-box binding protein associated factor 15.
   
 0.911
CCNF
Cyclin F; Belongs to the cyclin family.
    
 
 0.905
HSPA4
Heat shock protein family A (Hsp70) member 4.
   
 0.897
ENSAPLP00000030109
Uncharacterized protein.
   
 0.895
SRSF1
Uncharacterized protein.
   
 0.880
UBE2I
Ubiquitin conjugating enzyme E2 I; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.840
G3BP1
G3BP stress granule assembly factor 1.
   
 
 0.831
EWSR1-2
EWS RNA binding protein 1.
   
 0.823
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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