Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PGAP6Transmembrane protein 8A. (709 aa)    
Predicted Functional Partners:
NPRL3
NPR3 like, GATOR1 complex subunit.
      
 0.645
RHBDF1
Rhomboid 5 homolog 1.
   
  
 0.555
IGDCC4
Immunoglobulin superfamily DCC subclass member 4.
      
 0.554
TMEM50A
Transmembrane protein 50A.
      
 0.487
CFDP1
Uncharacterized protein.
      
 0.485
LUC7L
LUC7 like.
      
 0.425
ENSAPLP00000019050
Uncharacterized protein.
      
 0.425
ACER1
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.401
HMGXB4
HMG-box containing 4.
      
 0.400
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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