TGS1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TGS1

Trimethylguanosine synthase 1. (888 aa)

Predicted Functional Partners:

SNRPF

0.972

SNRPG

0.962

SPACA6

0.813

NCOA6

0.763

GEMIN5

0.759

GEMIN2

0.740

SNRPD3

0.737

SPATA6

0.705

DDX20

0.680

TBL1X

0.613

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX20	GEMIN2	ENSAPLP00000013658	ENSAPLP00000011848	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.997
DDX20	GEMIN5	ENSAPLP00000013658	ENSAPLP00000006455	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 5.	0.998
DDX20	SNRPD3	ENSAPLP00000013658	ENSAPLP00000008346	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D3.	0.810
DDX20	SNRPF	ENSAPLP00000013658	ENSAPLP00000025809	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein polypeptide F.	0.860
DDX20	SNRPG	ENSAPLP00000013658	ENSAPLP00000003436	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein polypeptide G.	0.803
DDX20	SPACA6	ENSAPLP00000013658	ENSAPLP00000027472	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Ig-like domain-containing protein.	0.681
DDX20	SPATA6	ENSAPLP00000013658	ENSAPLP00000022056	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Spermatogenesis associated 6.	0.801
DDX20	TGS1	ENSAPLP00000013658	ENSAPLP00000005676	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Trimethylguanosine synthase 1.	0.680
GEMIN2	DDX20	ENSAPLP00000011848	ENSAPLP00000013658	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	0.997
GEMIN2	GEMIN5	ENSAPLP00000011848	ENSAPLP00000006455	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 5.	0.983
GEMIN2	SNRPD3	ENSAPLP00000011848	ENSAPLP00000008346	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Small nuclear ribonucleoprotein Sm D3.	0.785
GEMIN2	SNRPF	ENSAPLP00000011848	ENSAPLP00000025809	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Small nuclear ribonucleoprotein polypeptide F.	0.940
GEMIN2	SNRPG	ENSAPLP00000011848	ENSAPLP00000003436	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Small nuclear ribonucleoprotein polypeptide G.	0.932
GEMIN2	TGS1	ENSAPLP00000011848	ENSAPLP00000005676	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Trimethylguanosine synthase 1.	0.740
GEMIN5	DDX20	ENSAPLP00000006455	ENSAPLP00000013658	Gem nuclear organelle associated protein 5.	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	0.998
GEMIN5	GEMIN2	ENSAPLP00000006455	ENSAPLP00000011848	Gem nuclear organelle associated protein 5.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.983
GEMIN5	SNRPD3	ENSAPLP00000006455	ENSAPLP00000008346	Gem nuclear organelle associated protein 5.	Small nuclear ribonucleoprotein Sm D3.	0.801
GEMIN5	SNRPF	ENSAPLP00000006455	ENSAPLP00000025809	Gem nuclear organelle associated protein 5.	Small nuclear ribonucleoprotein polypeptide F.	0.788
GEMIN5	SNRPG	ENSAPLP00000006455	ENSAPLP00000003436	Gem nuclear organelle associated protein 5.	Small nuclear ribonucleoprotein polypeptide G.	0.749
GEMIN5	SPATA6	ENSAPLP00000006455	ENSAPLP00000022056	Gem nuclear organelle associated protein 5.	Spermatogenesis associated 6.	0.817