OTUD3 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OTUD3

OTU deubiquitinase 3. (365 aa)

Predicted Functional Partners:

MRPL13

0.907

MRPL32

0.898

RPL5

0.895

MRPS9

0.891

RPL11

0.891

RPL23

0.890

RPS3

0.889

RPS11

0.889

ENSAPLP00000021993

0.883

MRPL20

0.882

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPLP00000021993	MRPL13	ENSAPLP00000021993	ENSAPLP00000018566	Uncharacterized protein.	Mitochondrial ribosomal protein L13.	0.998
ENSAPLP00000021993	MRPL20	ENSAPLP00000021993	ENSAPLP00000020289	Uncharacterized protein.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.998
ENSAPLP00000021993	MRPL32	ENSAPLP00000021993	ENSAPLP00000003651	Uncharacterized protein.	Mitochondrial ribosomal protein L32.	0.998
ENSAPLP00000021993	MRPS9	ENSAPLP00000021993	ENSAPLP00000013741	Uncharacterized protein.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
ENSAPLP00000021993	OTUD3	ENSAPLP00000021993	ENSAPLP00000005707	Uncharacterized protein.	OTU deubiquitinase 3.	0.883
ENSAPLP00000021993	RPL11	ENSAPLP00000021993	ENSAPLP00000030505	Uncharacterized protein.	Ribosomal protein L11.	0.998
ENSAPLP00000021993	RPL23	ENSAPLP00000021993	ENSAPLP00000010466	Uncharacterized protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.998
ENSAPLP00000021993	RPL5	ENSAPLP00000021993	ENSAPLP00000015871	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.997
ENSAPLP00000021993	RPS11	ENSAPLP00000021993	ENSAPLP00000028396	Uncharacterized protein.	Ribosomal protein S11.	0.998
ENSAPLP00000021993	RPS3	ENSAPLP00000021993	ENSAPLP00000014372	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.998
MRPL13	ENSAPLP00000021993	ENSAPLP00000018566	ENSAPLP00000021993	Mitochondrial ribosomal protein L13.	Uncharacterized protein.	0.998
MRPL13	MRPL20	ENSAPLP00000018566	ENSAPLP00000020289	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.998
MRPL13	MRPL32	ENSAPLP00000018566	ENSAPLP00000003651	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L32.	0.998
MRPL13	MRPS9	ENSAPLP00000018566	ENSAPLP00000013741	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
MRPL13	OTUD3	ENSAPLP00000018566	ENSAPLP00000005707	Mitochondrial ribosomal protein L13.	OTU deubiquitinase 3.	0.907
MRPL13	RPL11	ENSAPLP00000018566	ENSAPLP00000030505	Mitochondrial ribosomal protein L13.	Ribosomal protein L11.	0.999
MRPL13	RPL23	ENSAPLP00000018566	ENSAPLP00000010466	Mitochondrial ribosomal protein L13.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
MRPL13	RPL5	ENSAPLP00000018566	ENSAPLP00000015871	Mitochondrial ribosomal protein L13.	Ribosomal_L18_c domain-containing protein.	0.999
MRPL13	RPS11	ENSAPLP00000018566	ENSAPLP00000028396	Mitochondrial ribosomal protein L13.	Ribosomal protein S11.	0.998
MRPL13	RPS3	ENSAPLP00000018566	ENSAPLP00000014372	Mitochondrial ribosomal protein L13.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.998