STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HACE1HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1. (942 aa)    
Predicted Functional Partners:
UBE2L3
Ubiquitin conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.964
KIAA1324
KIAA1324.
    
 0.770
ENSAPLP00000029053
RRM domain-containing protein.
    
 
 0.741
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.740
ENSAPLP00000023897
Uncharacterized protein.
    
 0.739
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.730
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.728
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
    
 0.704
EPRS1
Glutamyl-prolyl-tRNA synthetase.
   
   0.648
MARS1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.606
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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