STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS10Pseudouridine synthase 10. (157 aa)    
Predicted Functional Partners:
PUS7L
Pseudouridine synthase 7 like.
   
  
 0.643
RPUSD2
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
      
 0.618
TRUB2
TruB pseudouridine synthase family member 2.
   
  
 0.618
SUPT7L
SPT7 like, STAGA complex gamma subunit.
      
 0.599
ABITRAM
Actin binding transcription modulator.
    
   0.581
PPP1R7
LRRcap domain-containing protein.
      
 0.569
OST4
Oligosaccharyltransferase complex subunit 4, non-catalytic.
      
 0.524
SMDT1
Single-pass membrane protein with aspartate rich tail 1.
      
 0.509
SYDE2
Synapse defective Rho GTPase homolog 2.
      
 0.501
PCGF6
Polycomb group ring finger 6.
      
 0.501
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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