U3IFJ6_ANAPP protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U3IFJ6_ANAPP

Uncharacterized protein. (452 aa)

Predicted Functional Partners:

TBX2

0.909

MSGN1

0.775

WNT3A

0.734

FGF8

0.719

DLL1

0.656

PAX3

0.634

MEOX1

0.617

BMP4

0.616

SCX

0.613

TMEM108

0.611

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMP4	FGF8	ENSAPLP00000029585	ENSAPLP00000027015	Bone morphogenetic protein 4.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.819
BMP4	PAX3	ENSAPLP00000029585	ENSAPLP00000010792	Bone morphogenetic protein 4.	Paired box 3.	0.611
BMP4	TBX2	ENSAPLP00000029585	ENSAPLP00000024340	Bone morphogenetic protein 4.	Uncharacterized protein.	0.504
BMP4	U3IFJ6_ANAPP	ENSAPLP00000029585	ENSAPLP00000006018	Bone morphogenetic protein 4.	Uncharacterized protein.	0.616
BMP4	WNT3A	ENSAPLP00000029585	ENSAPLP00000032584	Bone morphogenetic protein 4.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.787
DLL1	FGF8	ENSAPLP00000011451	ENSAPLP00000027015	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.495
DLL1	MEOX1	ENSAPLP00000011451	ENSAPLP00000017723	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Mesenchyme homeobox 1.	0.479
DLL1	U3IFJ6_ANAPP	ENSAPLP00000011451	ENSAPLP00000006018	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Uncharacterized protein.	0.656
DLL1	WNT3A	ENSAPLP00000011451	ENSAPLP00000032584	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.581
FGF8	BMP4	ENSAPLP00000027015	ENSAPLP00000029585	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Bone morphogenetic protein 4.	0.819
FGF8	DLL1	ENSAPLP00000027015	ENSAPLP00000011451	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.495
FGF8	PAX3	ENSAPLP00000027015	ENSAPLP00000010792	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Paired box 3.	0.618
FGF8	U3IFJ6_ANAPP	ENSAPLP00000027015	ENSAPLP00000006018	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.719
FGF8	WNT3A	ENSAPLP00000027015	ENSAPLP00000032584	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.770
MEOX1	DLL1	ENSAPLP00000017723	ENSAPLP00000011451	Mesenchyme homeobox 1.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.479
MEOX1	SCX	ENSAPLP00000017723	ENSAPLP00000007892	Mesenchyme homeobox 1.	Scleraxis bHLH transcription factor.	0.617
MEOX1	U3IFJ6_ANAPP	ENSAPLP00000017723	ENSAPLP00000006018	Mesenchyme homeobox 1.	Uncharacterized protein.	0.617
MSGN1	U3IFJ6_ANAPP	ENSAPLP00000001275	ENSAPLP00000006018	Mesogenin 1.	Uncharacterized protein.	0.775
PAX3	BMP4	ENSAPLP00000010792	ENSAPLP00000029585	Paired box 3.	Bone morphogenetic protein 4.	0.611
PAX3	FGF8	ENSAPLP00000010792	ENSAPLP00000027015	Paired box 3.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.618