Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRM1Mitochondrial rRNA methyltransferase 1. (386 aa)    
Predicted Functional Partners:
CGGBP1
CGG triplet repeat binding protein 1.
    
   0.821
TADA2A
Transcriptional adapter.
   
  
 0.772
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
   0.762
U3IWR7_ANAPP
Uncharacterized protein.
  
 
 0.743
MRPL15
Mitochondrial ribosomal protein L15.
  
   0.741
VPS26B
VPS26, retromer complex component B.
    
   0.733
DHRS11
Dehydrogenase/reductase 11; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
 0.731
MTERF3
Mitochondrial transcription termination factor 3.
    
 
 0.707
MRM2
FtsJ domain-containing protein.
  
  
 0.705
DDX52
Uncharacterized protein.
   
  
 0.698
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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