LYST protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

LYST

Uncharacterized protein. (1134 aa)

Predicted Functional Partners:

WDFY4

0.903

ENSAPLP00000024702

0.858

PLS1

0.773

FIG4

0.705

HPS6

0.700

SQSTM1

0.671

ARID5B

0.665

VTA1

0.654

UNC13D

0.650

NOLC1

0.611

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID5B	LYST	ENSAPLP00000010677	ENSAPLP00000006035	AT-rich interaction domain 5B.	Uncharacterized protein.	0.665
ENSAPLP00000024702	LYST	ENSAPLP00000024702	ENSAPLP00000006035	BEACH domain-containing protein.	Uncharacterized protein.	0.858
FIG4	HPS6	ENSAPLP00000013114	ENSAPLP00000011967	FIG4 phosphoinositide 5-phosphatase.	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.	0.483
FIG4	LYST	ENSAPLP00000013114	ENSAPLP00000006035	FIG4 phosphoinositide 5-phosphatase.	Uncharacterized protein.	0.705
FIG4	SQSTM1	ENSAPLP00000013114	ENSAPLP00000028233	FIG4 phosphoinositide 5-phosphatase.	Uncharacterized protein.	0.548
HPS6	FIG4	ENSAPLP00000011967	ENSAPLP00000013114	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.	FIG4 phosphoinositide 5-phosphatase.	0.483
HPS6	LYST	ENSAPLP00000011967	ENSAPLP00000006035	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.	Uncharacterized protein.	0.700
HPS6	NOLC1	ENSAPLP00000011967	ENSAPLP00000011571	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.	Nucleolar and coiled-body phosphoprotein 1.	0.485
LYST	ARID5B	ENSAPLP00000006035	ENSAPLP00000010677	Uncharacterized protein.	AT-rich interaction domain 5B.	0.665
LYST	ENSAPLP00000024702	ENSAPLP00000006035	ENSAPLP00000024702	Uncharacterized protein.	BEACH domain-containing protein.	0.858
LYST	FIG4	ENSAPLP00000006035	ENSAPLP00000013114	Uncharacterized protein.	FIG4 phosphoinositide 5-phosphatase.	0.705
LYST	HPS6	ENSAPLP00000006035	ENSAPLP00000011967	Uncharacterized protein.	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.	0.700
LYST	NOLC1	ENSAPLP00000006035	ENSAPLP00000011571	Uncharacterized protein.	Nucleolar and coiled-body phosphoprotein 1.	0.611
LYST	PLS1	ENSAPLP00000006035	ENSAPLP00000002675	Uncharacterized protein.	Plastin 1.	0.773
LYST	SQSTM1	ENSAPLP00000006035	ENSAPLP00000028233	Uncharacterized protein.	Uncharacterized protein.	0.671
LYST	UNC13D	ENSAPLP00000006035	ENSAPLP00000030531	Uncharacterized protein.	Unc-13 homolog D.	0.650
LYST	VTA1	ENSAPLP00000006035	ENSAPLP00000001845	Uncharacterized protein.	Vesicle trafficking 1.	0.654
LYST	WDFY4	ENSAPLP00000006035	ENSAPLP00000016273	Uncharacterized protein.	BEACH domain-containing protein.	0.903
NOLC1	HPS6	ENSAPLP00000011571	ENSAPLP00000011967	Nucleolar and coiled-body phosphoprotein 1.	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.	0.485
NOLC1	LYST	ENSAPLP00000011571	ENSAPLP00000006035	Nucleolar and coiled-body phosphoprotein 1.	Uncharacterized protein.	0.611