STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARIH2RBR-type E3 ubiquitin transferase. (490 aa)    
Predicted Functional Partners:
ANKIB1
ANK_REP_REGION domain-containing protein.
 
  
 0.945
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.933
U3IK98_ANAPP
Uncharacterized protein.
 
  
 0.915
RNF7
Ring finger protein 7.
    
 0.894
UBE2L3
Ubiquitin conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.753
OPTN
Optineurin.
    
 0.749
RPS27A
Ubiquitin-like domain-containing protein.
   
 0.741
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.704
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
    
  0.683
U3IMS8_ANAPP
Uncharacterized protein; Belongs to the peptidase C19 family.
    
 0.623
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.