Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM25RNA binding motif protein 25. (458 aa)    
Predicted Functional Partners:
PRPF40A
Pre-mRNA processing factor 40 homolog A.
   
 0.975
SRRM1
Serine and arginine repetitive matrix 1.
   
 0.971
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.936
RBM39
RNA binding motif protein 39.
   
0.924
SRRM3
Serine/arginine repetitive matrix 3.
   
 0.921
ENSAPLP00000029972
RRM domain-containing protein.
   
 0.904
PRRC2C
Proline rich coiled-coil 2C.
   
    0.903
ENSAPLP00000025359
PWI domain-containing protein.
 
      0.900
WAC
WW domain containing adaptor with coiled-coil.
   
 0.891
DDX46
DEAD-box helicase 46.
   
 0.890
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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