STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MATN3Matrilin 3. (483 aa)    
Predicted Functional Partners:
GALC
Galactosylceramidase.
      
 0.630
THBS4
Uncharacterized protein.
   
 0.587
COMP
Uncharacterized protein.
   
 0.587
HACE1
HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1.
   
 
 0.560
GFRA3
GDNF family receptor alpha 3.
     
 0.551
PGF
Placental growth factor; Belongs to the PDGF/VEGF growth factor family.
      
 0.550
TMEM72
Transmembrane protein 72.
      
 0.549
HAPLN1
Hyaluronan and proteoglycan link protein 1.
   
  
 0.544
LUM
Lumican.
   
 0.539
CRELD2
Cysteine rich with EGF like domains 2.
    
 0.525
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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