STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM98BFamily with sequence similarity 98 member B. (411 aa)    
Predicted Functional Partners:
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.995
DDX1
DEAD-box helicase 1.
   
 0.993
C2orf49
Chromosome 2 open reading frame 49.
    
 0.993
RTRAF
RNA transcription, translation and transport factor.
    
 0.990
FAM98A
Family with sequence similarity 98 member A.
  
 
0.973
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
    
 0.870
SLC46A1
Solute carrier family 46 member 1.
      
 0.748
U3IUD0_ANAPP
JmjC domain-containing protein.
    
 0.741
C15orf41
Chromosome 15 open reading frame 41.
    
 
 0.710
ANKMY2
Ankyrin repeat and MYND domain containing 2.
    
 0.678
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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