STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM210AFamily with sequence similarity 210 member A. (275 aa)    
Predicted Functional Partners:
HIBADH
3-hydroxyisobutyrate dehydrogenase.
   
  
 0.657
ATAD3A
ATPase family AAA domain containing 3A.
    
 
 0.648
CPED1
Cadherin like and PC-esterase domain containing 1.
      
 0.547
DDX27
DEAD-box helicase 27; Belongs to the DEAD box helicase family.
      
 0.546
C11H15orf40
Uncharacterized protein.
   
  
 0.546
FUBP3
Far upstream element binding protein 3.
      
 0.485
GINS3
GINS complex subunit 3.
   
  
 0.463
GHITM
Growth hormone inducible transmembrane protein; Belongs to the BI1 family.
      
 0.460
IQCA1
IQ motif containing with AAA domain 1.
   
  
 0.456
GFM1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
   
    0.445
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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