FBXO39 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FBXO39

F-box protein 39. (439 aa)

Predicted Functional Partners:

SKP1

0.631

UBOX5

0.583

SH2D4B

0.578

LONP2

0.556

FCHSD2

0.545

CUL1

0.545

NRDC

0.544

PDZRN3

0.485

SHQ1

0.485

RNF7

0.467

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL1	FBXO39	ENSAPLP00000020847	ENSAPLP00000006630	Cullin 1; Belongs to the cullin family.	F-box protein 39.	0.545
CUL1	NRDC	ENSAPLP00000020847	ENSAPLP00000002456	Cullin 1; Belongs to the cullin family.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.510
CUL1	RNF7	ENSAPLP00000020847	ENSAPLP00000006207	Cullin 1; Belongs to the cullin family.	Ring finger protein 7.	0.983
CUL1	SKP1	ENSAPLP00000020847	ENSAPLP00000014996	Cullin 1; Belongs to the cullin family.	S-phase kinase associated protein 1; Belongs to the SKP1 family.	0.999
FBXO39	CUL1	ENSAPLP00000006630	ENSAPLP00000020847	F-box protein 39.	Cullin 1; Belongs to the cullin family.	0.545
FBXO39	FCHSD2	ENSAPLP00000006630	ENSAPLP00000019849	F-box protein 39.	FCH and double SH3 domains 2.	0.545
FBXO39	LONP2	ENSAPLP00000006630	ENSAPLP00000024047	F-box protein 39.	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-.	0.556
FBXO39	NRDC	ENSAPLP00000006630	ENSAPLP00000002456	F-box protein 39.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.544
FBXO39	PDZRN3	ENSAPLP00000006630	ENSAPLP00000013906	F-box protein 39.	PDZ domain containing ring finger 3.	0.485
FBXO39	RNF7	ENSAPLP00000006630	ENSAPLP00000006207	F-box protein 39.	Ring finger protein 7.	0.467
FBXO39	SH2D4B	ENSAPLP00000006630	ENSAPLP00000006723	F-box protein 39.	SH2 domain containing 4B.	0.578
FBXO39	SHQ1	ENSAPLP00000006630	ENSAPLP00000032255	F-box protein 39.	SHQ1, H/ACA ribonucleoprotein assembly factor.	0.485
FBXO39	SKP1	ENSAPLP00000006630	ENSAPLP00000014996	F-box protein 39.	S-phase kinase associated protein 1; Belongs to the SKP1 family.	0.631
FBXO39	UBOX5	ENSAPLP00000006630	ENSAPLP00000032777	F-box protein 39.	U-box domain containing 5.	0.583
FCHSD2	FBXO39	ENSAPLP00000019849	ENSAPLP00000006630	FCH and double SH3 domains 2.	F-box protein 39.	0.545
FCHSD2	LONP2	ENSAPLP00000019849	ENSAPLP00000024047	FCH and double SH3 domains 2.	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-.	0.640
FCHSD2	PDZRN3	ENSAPLP00000019849	ENSAPLP00000013906	FCH and double SH3 domains 2.	PDZ domain containing ring finger 3.	0.460
FCHSD2	SH2D4B	ENSAPLP00000019849	ENSAPLP00000006723	FCH and double SH3 domains 2.	SH2 domain containing 4B.	0.641
FCHSD2	SHQ1	ENSAPLP00000019849	ENSAPLP00000032255	FCH and double SH3 domains 2.	SHQ1, H/ACA ribonucleoprotein assembly factor.	0.667
FCHSD2	UBOX5	ENSAPLP00000019849	ENSAPLP00000032777	FCH and double SH3 domains 2.	U-box domain containing 5.	0.667